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JAK-STAT activation contributes to cytotoxic T cell–mediated basal cell death in human chronic lung allograft dysfunction
Aaditya Khatri, Jamie L. Todd, Fran L. Kelly, Andrew Nagler, Zhicheng Ji, Vaibhav Jain, Simon G. Gregory, Kent J. Weinhold, Scott M. Palmer
Aaditya Khatri, Jamie L. Todd, Fran L. Kelly, Andrew Nagler, Zhicheng Ji, Vaibhav Jain, Simon G. Gregory, Kent J. Weinhold, Scott M. Palmer
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Resource and Technical Advance Pulmonology Transplantation

JAK-STAT activation contributes to cytotoxic T cell–mediated basal cell death in human chronic lung allograft dysfunction

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Abstract

Chronic lung allograft dysfunction (CLAD) is the leading cause of death in lung transplant recipients. CLAD is characterized clinically by a persistent decline in pulmonary function and histologically by the development of airway-centered fibrosis known as bronchiolitis obliterans. There are no approved therapies to treat CLAD, and the mechanisms underlying its development remain poorly understood. We performed single-cell RNA-Seq and spatial transcriptomic analysis of explanted tissues from human lung recipients with CLAD, and we performed independent validation studies to identify an important role of Janus kinase–signal transducer and activator of transcription (JAK-STAT) signaling in airway epithelial cells that contributes to airway-specific alloimmune injury. Specifically, we established that activation of JAK-STAT signaling leads to upregulation of major histocompatibility complex 1 (MHC-I) in airway basal cells, an important airway epithelial progenitor population, which leads to cytotoxic T cell–mediated basal cell death. This study provides mechanistic insight into the cell-to-cell interactions driving airway-centric alloimmune injury in CLAD, suggesting a potentially novel therapeutic strategy for CLAD prevention or treatment.

Authors

Aaditya Khatri, Jamie L. Todd, Fran L. Kelly, Andrew Nagler, Zhicheng Ji, Vaibhav Jain, Simon G. Gregory, Kent J. Weinhold, Scott M. Palmer

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Figure 4

Enrichment of activated and mature cytotoxic CD8+ T cells in CLAD lung compared with donor control.

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Enrichment of activated and mature cytotoxic CD8+ T cells in CLAD lung c...
(A) Cell count analysis of single-cell RNA-Seq data set shows enrichment of total CD8 cell populations (no statistically significant difference). (B) Violin plot of PTPRC (CD45RA) gene expression shows increased maturation of CD8+ T cells in CLAD lung. (C) Violin plots demonstrating increased expression of activation markers (GZMA, GZMB, GZMH, IFNG) in CLAD CD8+ T cells compared with donor control. (D) Subcluster analysis of the T cell population from the single-cell RNA-Seq data set. (E) Schematic of markers (PTPRC, CCR7) of T cell maturation. (F) Gene expression dot plot used to annotate subclusters identified in D. (G) CellChat analysis of predicted T cell–epithelial cell interactions in CLAD (left) compared with control (right) lung cells. The chord diagram shows a predicted increase in CD8+ cell, and especially CD8+ TEMRA cell, interactions with basal and ciliated airway epithelial cells. Statistical analysis for cell counts (A) was performed using unpaired parametric t tests. Differential gene expression (B and C) was performed using the Wilcoxon rank sum test with Bonferroni correction to generate adjusted P values. Data are shown as mean ± SEM.

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