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Combined functional genomic and chemical screens identify SETD8 as a therapeutic target in MYC-driven medulloblastoma
Bethany Veo, Etienne Danis, Angela Pierce, Ismail Sola, Dong Wang, Nicholas K. Foreman, Jian Jin, Anqi Ma, Natalie Serkova, Sujatha Venkataraman, Rajeev Vibhakar
Bethany Veo, Etienne Danis, Angela Pierce, Ismail Sola, Dong Wang, Nicholas K. Foreman, Jian Jin, Anqi Ma, Natalie Serkova, Sujatha Venkataraman, Rajeev Vibhakar
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Research Article Oncology

Combined functional genomic and chemical screens identify SETD8 as a therapeutic target in MYC-driven medulloblastoma

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Abstract

Medulloblastoma (MB) is the most prevalent malignant brain tumor in children, accounting for 20% of all childhood brain tumors. The molecular profiling of MB into 4 major subgroups (WNT, SHH, Grp3, and Grp4) emphasizes the heterogeneity of MB and opens paths in which treatments may be targeted to molecularly aggressive and distinct tumors. Current therapeutic strategies for Group 3 MB are challenging and can be accompanied by long-term side effects from treatment. The involvement of altered epigenetic machinery in neoplastic transformation in MB has become more evident. Thus, we performed an epigenomic RNAi and chemical screen and identified SETD8/PRE-SET7/KMT5a as a critical player in maintaining proliferation and cell survival of MB cells. We have found that inhibition of SETD8 effects the migration/invasive ability of MB cells. SETD8 alters H4K20me chromatin occupancy at key genes involved in tumor invasiveness and pluripotency. Interestingly, these results link the aggressive and metastatic behavior of MYC-driven MB with SETD8 activity. Based on our results, we suggest that SETD8 has a critical role mediating Group 3 MB tumorigenesis. Establishing a role for SETD8 as a factor in MYC-driven MB has potential to lead to more effective therapies needed to improve outcomes in high-risk patients.

Authors

Bethany Veo, Etienne Danis, Angela Pierce, Ismail Sola, Dong Wang, Nicholas K. Foreman, Jian Jin, Anqi Ma, Natalie Serkova, Sujatha Venkataraman, Rajeev Vibhakar

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Figure 8

UNC0379 treatment mimics SETD8 knockdown in medulloblastoma cell lines.

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UNC0379 treatment mimics SETD8 knockdown in medulloblastoma cell lines.
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(A) Cell viability (total red fluorescence) of NucRed-expressing DAOY cells vs. UNC0379 (μM). Three independent replicates are shown as mean ± SD. IC50 of 2 μM was calculated with GraphPad prism. (B) NucRed-expressing D458 neurospheres treated with increasing concentration of UNC0379. Three independent replicates are represented in the line graph of cell viability (total red fluorescence) mean ± SD vs. time. (C) Western blot for β-catenin, SETD8, Snai1, and Actin from D458 cells treated with 0.5 μM or 1 μM UNC0379 for 48 hours. See also Supplemental Figure 6 for quantification. (D) Methylcellulose assay with D458, D425, and clonogenic assay with DAOY cells treated with 0.2 μM UNC0379. Representative images are shown. See also Supplemental Figure 6. (E) Box and whisker plots from D represent the mean ± SD from 3 independent replicates. Two-way Anova; *P < 0.05, **P < 0.01, ***P < 0.001. (F) Invasion assay of DAOY cells treated with 2 μM UNC0379 over 48 hours. Line graphs represent the cell index mean vs. time ± SD in 3 independent replicates. (G) Representative plots of Aldefluor+ cells vs. side scatter are shown for D458 or D425 cells with or without 2 μM UNC0379 treatment. (H) Box and whisker plot represents 3 independent replicates of percent ALDH+ cells with and without treatment. See also Supplemental Figure 6.

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