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DNASE1L3 enhances antitumor immunity and suppresses tumor progression in colon cancer
Wenling Li, Hideki Nakano, Wei Fan, Yuanyuan Li, Payel Sil, Keiko Nakano, Fei Zhao, Peer W. Karmaus, Sara A. Grimm, Min Shi, Xin Xu, Ryushin Mizuta, Daisuke Kitamura, Yisong Wan, Michael B. Fessler, Donald N. Cook, Igor Shats, Xiaoling Li, Leping Li
Wenling Li, Hideki Nakano, Wei Fan, Yuanyuan Li, Payel Sil, Keiko Nakano, Fei Zhao, Peer W. Karmaus, Sara A. Grimm, Min Shi, Xin Xu, Ryushin Mizuta, Daisuke Kitamura, Yisong Wan, Michael B. Fessler, Donald N. Cook, Igor Shats, Xiaoling Li, Leping Li
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Research Article Oncology

DNASE1L3 enhances antitumor immunity and suppresses tumor progression in colon cancer

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Abstract

DNASE1L3, an enzyme highly expressed in DCs, is functionally important for regulating autoimmune responses to self-DNA and chromatin. Deficiency of DNASE1L3 leads to development of autoimmune diseases in both humans and mice. However, despite the well-established causal relationship between DNASE1L3 and immunity, little is known about the involvement of DNASE1L3 in regulation of antitumor immunity, the foundation of modern antitumor immunotherapy. In this study, we identify DNASE1L3 as a potentially new regulator of antitumor immunity and a tumor suppressor in colon cancer. In humans, DNASE1L3 is downregulated in tumor-infiltrating DCs, and this downregulation is associated with poor patient prognosis and reduced tumor immune cell infiltration in many cancer types. In mice, Dnase1l3 deficiency in the tumor microenvironment enhances tumor formation and growth in several colon cancer models. Notably, the increased tumor formation and growth in Dnase1l3-deficient mice are associated with impaired antitumor immunity, as evidenced by a substantial reduction of cytotoxic T cells and a unique subset of DCs. Consistently, Dnase1l3-deficient DCs directly modulate cytotoxic T cells in vitro. To our knowledge, our study unveils a previously unknown link between DNASE1L3 and antitumor immunity and further suggests that restoration of DNASE1L3 activity may represent a potential therapeutic approach for anticancer therapy.

Authors

Wenling Li, Hideki Nakano, Wei Fan, Yuanyuan Li, Payel Sil, Keiko Nakano, Fei Zhao, Peer W. Karmaus, Sara A. Grimm, Min Shi, Xin Xu, Ryushin Mizuta, Daisuke Kitamura, Yisong Wan, Michael B. Fessler, Donald N. Cook, Igor Shats, Xiaoling Li, Leping Li

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Figure 1

DNASE1L3 is downregulated in human tumors, and its downregulation is associated with poor patient survival.

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DNASE1L3 is downregulated in human tumors, and its downregulation is as...
(A) The mRNA levels of DNASE1L3 are downregulated in multiple types of human cancer. Violin plots of relative DNASE1L3 expression in paired tumor versus normal tissue for 17 human tumor types based on RNA-Seq data sets from TCGA. BLCA, bladder urothelial carcinoma; BRCA, breast invasive carcinoma; CHOL, cholangiocarcinoma; COAD, cholangiocarcinoma; ESCA, esophageal carcinoma; HNSC, head and neck squamous cell carcinoma; KICH, kidney chromophobe; KIRC, kidney renal clear cell carcinoma; KIRP, kidney renal papillary cell carcinoma; LIHC, liver hepatocellular carcinoma; LUAD, lung adenocarcinoma; LUSC, lung squamous cell carcinoma; PRAD, prostate adenocarcinoma; READ, rectum adenocarcinoma; STAD, stomach adenocarcinoma; THCA, thyroid carcinoma; UCEC, uterine corpus endometrial carcinoma. (B) High expression of DNASE1L3 is associated with increased survival in patients with CRC. Kaplan-Meier survival probability curves for the TCGA colorectal patients (n = 597). Survival of the patients with DNASE1L3 expression level in tumors above the mean are shown in red (favorable), and survival of those with DNASE1L3 expression level in tumors at or below the mean are shown in blue (unfavorable). P value was computed based on the log-rank test of the survival distributions of high and low expression groups. (C) DNASE1L3 is downregulated in cDC1 and cDC2 cells from tumors of patients with CRC compared with those from normal colorectal tissues. scRNA-Seq data sets of human colorectal tumors (18) were analyzed (n = 10 for normal cDC1, 36 for tumor cDC1, 36 for normal cDC2, and 64 for tumor cDC2; Mann-Whitney U test, *P < 0.05). (D) The expression of DNASE1L3 is positively correlated with that of several immune activation markers, particularly T cell activation markers, in patients with CRC. The mRNA levels of DNASE1L3 and those of selected immune activation markers from TCGA colorectal tumor RNA-Seq data were analyzed (n = 286; Pearson product-moment correlation test).

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