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OGDH and Bcl-xL loss causes synthetic lethality in glioblastoma
Trang T.T. Nguyen, Consuelo Torrini, Enyuan Shang, Chang Shu, Jeong-Yeon Mun, Qiuqiang Gao, Nelson Humala, Hasan O. Akman, Guoan Zhang, Mike-Andrew Westhoff, Georg Karpel-Massler, Jeffrey N. Bruce, Peter Canoll, Markus D. Siegelin
Trang T.T. Nguyen, Consuelo Torrini, Enyuan Shang, Chang Shu, Jeong-Yeon Mun, Qiuqiang Gao, Nelson Humala, Hasan O. Akman, Guoan Zhang, Mike-Andrew Westhoff, Georg Karpel-Massler, Jeffrey N. Bruce, Peter Canoll, Markus D. Siegelin
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Research Article Oncology

OGDH and Bcl-xL loss causes synthetic lethality in glioblastoma

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Abstract

Glioblastoma (GBM) remains an incurable disease, requiring more effective therapies. Through interrogation of publicly available CRISPR and RNAi library screens, we identified the α-ketoglutarate dehydrogenase (OGDH) gene, which encodes an enzyme that is part of the tricarboxylic acid (TCA) cycle, as essential for GBM growth. Moreover, by combining transcriptome and metabolite screening analyses, we discovered that loss of function of OGDH by the clinically validated drug compound CPI-613 was synthetically lethal with Bcl-xL inhibition (genetically and through the clinically validated BH3 mimetic, ABT263) in patient-derived xenografts as well neurosphere GBM cultures. CPI-613–mediated energy deprivation drove an integrated stress response with an upregulation of the BH3-only domain protein, Noxa, in an ATF4-dependent manner, as demonstrated by genetic loss-of-function experiments. Consistently, silencing of Noxa attenuated cell death induced by CPI-613 in model systems of GBM. In patient-derived xenograft models of GBM in mice, the combination treatment of ABT263 and CPI-613 suppressed tumor growth and extended animal survival more potently than each compound on its own. Therefore, combined inhibition of Bcl-xL along with disruption of the TCA cycle might be a treatment strategy for GBM.

Authors

Trang T.T. Nguyen, Consuelo Torrini, Enyuan Shang, Chang Shu, Jeong-Yeon Mun, Qiuqiang Gao, Nelson Humala, Hasan O. Akman, Guoan Zhang, Mike-Andrew Westhoff, Georg Karpel-Massler, Jeffrey N. Bruce, Peter Canoll, Markus D. Siegelin

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Figure 4

CPI-613 treatment causes energy deprivation and activates endoplasmic reticulum stress signaling.

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CPI-613 treatment causes energy deprivation and activates endoplasmic re...
(A) KNS42 cells were treated with CPI-613 for 24 hours, subjected to RNA-seq, and followed by GSEA. NES, normalized enrichment score; FDR, false discovery rate. (B) Western blots of KNS42, GBM22, GBM43, NCH644, and GBM12 cells treated with increasing concentrations of CPI-613 for 24 hours. Actin is a loading control. (C) Real-time PCR analysis of GBM22, KNS42, and GBM43 cells treated with increasing concentrations of CPI-613 for 24 hours. 18S is a housekeeping gene. FC, fold change. (D) Standard Western blot (KNS42) or protein capillary electrophoresis analyses (GBM22) of cells transfected with nontargeting siRNA (siNT) or with siRNA against ATF4 (total) followed by treatment with CPI-613 for 24 hours. Actin or vinculin is a loading control. (E) KNS42 and GBM22 cells were treated with CPI-613 for 24 hours and were subjected to chromatin immunoprecipitation with either a control antibody (IgG; negative control) or an antibody against ATF4. The Noxa region was amplified by PCR. (F) KNS42 and GBM22 cells were treated with CPI-613 for 24 hours and were subjected to chromatin immunoprecipitation with either a control antibody (IgG; negative control) or an antibody against H3K27ac. The Noxa region was amplified by PCR (n = 4 per group). Statistical significance was assessed by 1-way ANOVA with Dunnett’s multiple-comparison test (C) or 2-tailed Student’s t test (E and F). Data are shown as mean ± SD. *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001.

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