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Mitochondrial metabolic rewiring sensitizes mTORC1 inhibitor persister cells to cuproptosis
Heng Du, Heng-Jia Liu, Magdalena Losko, Yu Chi Yang, Min Yuan, Elizabeth P. Henske, John M. Asara, Mallika Singh, David J. Kwiatkowski
Heng Du, Heng-Jia Liu, Magdalena Losko, Yu Chi Yang, Min Yuan, Elizabeth P. Henske, John M. Asara, Mallika Singh, David J. Kwiatkowski
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Research Article Metabolism Oncology

Mitochondrial metabolic rewiring sensitizes mTORC1 inhibitor persister cells to cuproptosis

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Abstract

Therapeutics blocking PI3K/mTOR complex 1 (mTORC1) are commonly used for tumor treatment, and at times achieve major responses, yet minimal residual disease (MRD) persists, leading to tumor relapse. We developed multiple MRD models both in vitro (rapamycin persistent, RP) and in vivo after mTORC1 inhibition. All 11 RP/MRD cell lines showed complete growth and signaling insensitivity to rapamycin but variable sensitivity to bi-steric mTORC1 inhibitors, with MtorS2035 mutations identified in 4 of 7 RP cell lines. Multiomic analyses identified a pronounced shift toward oxidative phosphorylation and away from glycolysis with increased mitochondrial number in all RP/MRD models. MYC and SWI/SNF expression was significantly enhanced. Both the SWI/SNF inhibitor AU-15330 and the mitochondrial complex I oxidative phosphorylation inhibitor IACS-010759 showed pronounced synergy with bi-steric mTORC1 inhibitors to cause cuproptotic cell death in RP/MRD cells, suggesting these combinations as a potential patient treatment strategy for rapalog resistance.

Authors

Heng Du, Heng-Jia Liu, Magdalena Losko, Yu Chi Yang, Min Yuan, Elizabeth P. Henske, John M. Asara, Mallika Singh, David J. Kwiatkowski

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Figure 11

Inhibition of SWI/SNF function or OXPHOS shows synergy with bi-steric mTORC1-selective inhibitors in RP/MRD cells.

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Inhibition of SWI/SNF function or OXPHOS shows synergy with bi-steric mT...
(A–C) Dose-dependent cell growth inhibition curves of HCV29 and HCV29RP cells. Each dot and error bar on the curves represent mean ± SD (n = 6) in (B and C). Open circles are cells treated with fixed dose of 3 nM RMC-6272. (D–F) Low-dilution clone formation and clone number quantification of HCV29RP cells treated by different inhibitors. (G) ATP levels after different treatment in HCV29 and HCV29RP cells (24 hours). Each dot and error bar on the curves represent mean ± SD (n = 3). One-way ANOVA was used. *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001. (H) BRG1 KD in multiple cell lines with or without RMC treatment.

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