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Faithful modeling of terminal CD8+T cell dysfunction and epigenetic stabilization in vitro
Amir Yousif, Abbey A. Saadey, Ava Lowin, Asmaa M. Yousif, Ankita Saini, Madeline R. Allison, Kelley Ptak, Eugene M. Oltz, Hazem E. Ghoneim
Amir Yousif, Abbey A. Saadey, Ava Lowin, Asmaa M. Yousif, Ankita Saini, Madeline R. Allison, Kelley Ptak, Eugene M. Oltz, Hazem E. Ghoneim
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Research Article Immunology Oncology

Faithful modeling of terminal CD8+T cell dysfunction and epigenetic stabilization in vitro

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Abstract

Epigenetic scarring of terminally dysfunctional (TDysf) CD8+ T cells hinders long-term protection and response to immune checkpoint blockade during chronic infections and cancer. We developed a faithful in vitro model for CD8+ T cell terminal dysfunction as a platform to advance T cell immunotherapy. Using TCR-transgenic CD8+ T cells, we found that 1-week peptide stimulation, mimicking conditions in previous models, failed to induce a stable exhaustion program. In contrast, prolonged stimulation for 2–3 weeks induced T cell dysfunction but triggered activation-induced cell death, precluding long-term investigation of exhaustion programs. To better mimic in vivo exhaustion, we provided post-effector, chronic TGF-β1 signals, enabling survival of chronically stimulated CD8+ T cells for over 3 weeks. These conditions induced a state of terminal dysfunction, marked by a stable loss of effector, cytotoxicity, and memory programs, along with mitochondrial stress and impaired protein translation. Importantly, transcriptomic and epigenetic analyses verified the development of terminal exhaustion-specific signatures in TDysf cells. Adoptive transfer of TDysf cells revealed their inability to recall effector functions or proliferate after acute lymphocytic choriomeningitis virus rechallenge. This tractable model system enables investigation of molecular pathways driving T cell terminal dysfunction and discovery of therapeutic targets for cancer or chronic infections.

Authors

Amir Yousif, Abbey A. Saadey, Ava Lowin, Asmaa M. Yousif, Ankita Saini, Madeline R. Allison, Kelley Ptak, Eugene M. Oltz, Hazem E. Ghoneim

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Figure 2

Chronic antigenic stimulation faithfully induces terminal dysfunction.

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Chronic antigenic stimulation faithfully induces terminal dysfunction.
(...
(A) Schematic for in vitro stimulation of P14 cells: Activated P14 cells were acutely stimulated by GP33 peptide from day 2–7 and rested until day 19 (Acute-7d condition, blue) or repeatedly GP33-stimulated from day 2–19 with chronic TGF-β1 exposure (day 7–19, red TDysf) or without TGF-β1 signals (gray). Longitudinal tracking of (B) frequencies of PD-1+Tim3+ P14 cells, (C) P14 cell numbers/200 μL, (D) %Ifnγ+ and (E) %Tnf+ from day 7–19 for Acute-7d (blue), Chronic GP33 stim (gray), or Chronic GP33+TGF-β1 (red). (F) Representative FACS plots and bar graphs of Ifnγ and Tnf expression, (G) %Ifnγ+CD107a+, or (H) %Tnf+CD107a+ P14 cells on day 19 after GP33 peptide rechallenge. (I) Representative FACS plots and bar graphs of Tim3 and Ly108 expression. (J) Summary bar graph of %Il7r+CD62L+ P14 cells on day 19. Expression level (geometric MFI; gMFI) of (K) MitoTracker Green dye (for mitochondrial mass) and (L) MitoSox Red dye (for mitochondrial ROS) within P14 cells on day 19. (M) Schematic for tumor-killing assay of naive (yellow), Acute-7d, or TDysf P14 cells cocultured with GP33-expressing CT2A glioma tumor cells. (N) Bar graph showing numbers of dead CT2A-GP33 cells per 10 viable P14 cells. All n = 4 biological replicates, representative of 2 to 3 independent experiments. Adjusted P value *P < 0.05, **P < 0.01, ***P < 0.001, ****P < 0.0001. Comparisons were determined by 2-way ANOVA (B–E) or 1-way ANOVA with Tukey’s multiple comparisons (F–L and N). Error bars indicate mean ± SEM.

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