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Reduced dosage of Kmt2d modifies Tbx1 haploinsufficiency toward phenotypes of 22q11.2DS
Daniella Miller, Kevyn Jackson, Timothy C. Cox, Bernice E. Morrow
Daniella Miller, Kevyn Jackson, Timothy C. Cox, Bernice E. Morrow
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Research Article Cardiology Development Genetics

Reduced dosage of Kmt2d modifies Tbx1 haploinsufficiency toward phenotypes of 22q11.2DS

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Abstract

Haploinsufficiency of TBX1, which occurs in 22q11.2 deletion syndrome (22q11.2DS), leads to a heterogeneous spectrum of clinical manifestations, including craniofacial anomalies, immunodeficiency, and congenital heart defects. The variability in syndromic presentation between patients may be partially explained by variants in chromatin regulatory genes that act to further modify TBX1 function. To investigate this relationship, we selected KMT2D as a candidate gene because of its role in the etiology of Kabuki syndrome, which shares overlapping features with 22q11.2DS. We demonstrate that conditional inactivation of Kmt2d in the Tbx1 lineage in Tbx1-heterozygous mice leads to fully penetrant perinatal lethality and increased incidence of craniofacial dysmorphism, thymus and parathyroid gland hypoplasia, and aortic arch anomalies. At early stages, mutant embryos were found to have defects of the caudal pharyngeal apparatus, including abnormal patterning of the third pouch endoderm, hypoplastic fourth arches, and defective fourth arch arteries. Finally, analysis of single-cell RNA sequencing revealed dysregulation, and largely downregulation, of genes involved in basic cellular functions, suggesting that Tbx1 and Kmt2d developmentally converge upon essential biological processes. Overall, these results indicate that reduced dosage of Kmt2d perturbs the developmental landscape of the Tbx1 heterozygote, eliciting phenotypes that are shared between 22q11.2DS and Kabuki syndrome.

Authors

Daniella Miller, Kevyn Jackson, Timothy C. Cox, Bernice E. Morrow

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Figure 9

Kmt2d and Tbx1 have shared and separate functions in the Tbx1 lineage at E9.5.

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Kmt2d and Tbx1 have shared and separate functions in the Tbx1 lineage a...
The orange circles in each panel represent DEGs in Kmt2d-cKO embryos, whereas the green circles represent DEGs in Tbx1-cKO embryos. The intersection of the two circles is in purple and represents shared DEGs. The color of the arrows indicates the source of the highlighted DEGs. (A) Comparative analysis of the epithelial cell clusters reveals shared GO terms related to cell proliferation and migration. Gene sets unique to the Tbx1-cKO embryos include focal adhesion and regulation of signaling. (B) The overlap of DEGs in the Tbx1- and Kmt2d-cKO endothelium reveals no shared DEGs relevant to endothelial cell function. The Tbx1-cKO data had unique DEGs enriched for blood cell morphogenesis. (C) Comparative analysis of the aSHF data shows a subset of DEGs related to cardiac OFT morphogenesis that are unique to the Tbx1-cKO dataset. (D) Comparison of the DEGs found in the MLPs reveals a significant proportion of known Tbx1-associated genes that are unique to the Tbx1-cKO data. However, manual assessment of the overlapped genes between the two datasets revealed Tbx1-associated genes that are also known to intersect with other relevant datasets. (E) Venn diagram showing a comparison of the phenotypes between Kabuki syndrome and 22q11.2DS. There is large overlap in the impacted systems, but the classical clinical presentation for each syndrome is distinct. aSHF, anterior second heart field; DARs, differentially accessible regions; MLPs, multilineage primed progenitors; OFT, outflow tract; PAA, pharyngeal arch artery.

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ISSN 2379-3708

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