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Nicotinamide metabolism regulates glioblastoma stem cell maintenance
Jinkyu Jung, Leo J.Y. Kim, Xiuxing Wang, Qiulian Wu, Tanwarat Sanvoranart, Christopher G. Hubert, Briana C. Prager, Lisa C. Wallace, Xun Jin, Stephen C. Mack, Jeremy N. Rich
Jinkyu Jung, Leo J.Y. Kim, Xiuxing Wang, Qiulian Wu, Tanwarat Sanvoranart, Christopher G. Hubert, Briana C. Prager, Lisa C. Wallace, Xun Jin, Stephen C. Mack, Jeremy N. Rich
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Research Article Oncology Stem cells

Nicotinamide metabolism regulates glioblastoma stem cell maintenance

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Abstract

Metabolic dysregulation promotes cancer growth through not only energy production, but also epigenetic reprogramming. Here, we report that a critical node in methyl donor metabolism, nicotinamide N-methyltransferase (NNMT), ranked among the most consistently overexpressed metabolism genes in glioblastoma relative to normal brain. NNMT was preferentially expressed by mesenchymal glioblastoma stem cells (GSCs). NNMT depletes S-adenosyl methionine (SAM), a methyl donor generated from methionine. GSCs contained lower levels of methionine, SAM, and nicotinamide, but they contained higher levels of oxidized nicotinamide adenine dinucleotide (NAD+) than differentiated tumor cells. In concordance with the poor prognosis associated with DNA hypomethylation in glioblastoma, depletion of methionine, a key upstream methyl group donor, shifted tumors toward a mesenchymal phenotype and accelerated tumor growth. Targeting NNMT expression reduced cellular proliferation, self-renewal, and in vivo tumor growth of mesenchymal GSCs. Supporting a mechanistic link between NNMT and DNA methylation, targeting NNMT reduced methyl donor availability, methionine levels, and unmethylated cytosine, with increased levels of DNA methyltransferases, DNMT1 and DNMT3A. Supporting the clinical significance of these findings, NNMT portended poor prognosis for glioblastoma patients. Collectively, our findings support NNMT as a GSC-specific therapeutic target in glioblastoma by disrupting oncogenic DNA hypomethylation.

Authors

Jinkyu Jung, Leo J.Y. Kim, Xiuxing Wang, Qiulian Wu, Tanwarat Sanvoranart, Christopher G. Hubert, Briana C. Prager, Lisa C. Wallace, Xun Jin, Stephen C. Mack, Jeremy N. Rich

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Figure 7

NNMT and DNMT1 affect DNA methylation of inflammatory genes.

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NNMT and DNMT1 affect DNA methylation of inflammatory genes.
(A) CpG pro...
(A) CpG probes significantly anticorrelated with NNMT mRNA expression in TCGA DNA methylation 450K array and RNAseq datasets (n = 51). (B) CpG probes with significant positive correlation with DNMT1 mRNA expression in TCGA DNA methylation 450K array and RNAseq datasets (n = 51). (C) Distribution of CpG region in probes with significant positive or negative correlation with NNMT expression (pos correl; neg correl) compared with nonsignificantly correlated CpG probes. Differences in distribution tested with 2-way ANOVA. (D) Annotated genes with significant negative correlation with NNMT mRNA expression and significant positive correlation with DNMT1 mRNA expression. (E) Gene ontology analysis of the common genes among those with significant negative correlation with NNMT mRNA expression and significant positive correlation with DNMT1 mRNA expression. Size of each node indicates the size of each gene set; thickness of each edge corresponds with the number of genes shared between connected nodes. (F) RT-PCR analysis of mesenchymal subtype genes in proneural T3136 and T3691 cultured in different methionine restriction conditions (100% Met, 115.5 μM; 10% Met, 11.5 μM; 5% Met, 5.75 μM). (G) Schema for methylation-sensitive (qMethyl) RT-PCR. Blue arrows indicate CpG probes significantly correlated with DNMT1 expression. Red arrow indicates CpG probe significantly correlated with NNMT expression. H3K27ac ChIP-seq data of proneural and mesenchymal GSCs (Stephen C. Mack, unpublished observations) visualized on IGV 2.3.80. (H) Quantification of DNA methylation levels of CpG loci in the CTSZ promoter region in 4 proneural GSC models (T3094, T3136, T3691, GSC23) cultured in different methionine restriction conditions (100% Met, 115.5 μM; 10% Met, 11.5 μM; 5% Met, 5.75 μM). Two-tailed Student’s t test used to determine changes in mean between conditions. (I and J) Quantification of DNA methylation levels of CpG loci in the CTSZ promoter region in 2 proneural GSC models (T3136 and T3691) and 2 mesenchymal GSC models (T3264 and GSC20) (I) transduced with nontargeting control or shRNA clones targeting NNMT or (J) transduced with vector control or NNMT overexpression constructs.

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ISSN 2379-3708

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