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Nicotinamide metabolism regulates glioblastoma stem cell maintenance
Jinkyu Jung, Leo J.Y. Kim, Xiuxing Wang, Qiulian Wu, Tanwarat Sanvoranart, Christopher G. Hubert, Briana C. Prager, Lisa C. Wallace, Xun Jin, Stephen C. Mack, Jeremy N. Rich
Jinkyu Jung, Leo J.Y. Kim, Xiuxing Wang, Qiulian Wu, Tanwarat Sanvoranart, Christopher G. Hubert, Briana C. Prager, Lisa C. Wallace, Xun Jin, Stephen C. Mack, Jeremy N. Rich
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Research Article Oncology Stem cells

Nicotinamide metabolism regulates glioblastoma stem cell maintenance

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Abstract

Metabolic dysregulation promotes cancer growth through not only energy production, but also epigenetic reprogramming. Here, we report that a critical node in methyl donor metabolism, nicotinamide N-methyltransferase (NNMT), ranked among the most consistently overexpressed metabolism genes in glioblastoma relative to normal brain. NNMT was preferentially expressed by mesenchymal glioblastoma stem cells (GSCs). NNMT depletes S-adenosyl methionine (SAM), a methyl donor generated from methionine. GSCs contained lower levels of methionine, SAM, and nicotinamide, but they contained higher levels of oxidized nicotinamide adenine dinucleotide (NAD+) than differentiated tumor cells. In concordance with the poor prognosis associated with DNA hypomethylation in glioblastoma, depletion of methionine, a key upstream methyl group donor, shifted tumors toward a mesenchymal phenotype and accelerated tumor growth. Targeting NNMT expression reduced cellular proliferation, self-renewal, and in vivo tumor growth of mesenchymal GSCs. Supporting a mechanistic link between NNMT and DNA methylation, targeting NNMT reduced methyl donor availability, methionine levels, and unmethylated cytosine, with increased levels of DNA methyltransferases, DNMT1 and DNMT3A. Supporting the clinical significance of these findings, NNMT portended poor prognosis for glioblastoma patients. Collectively, our findings support NNMT as a GSC-specific therapeutic target in glioblastoma by disrupting oncogenic DNA hypomethylation.

Authors

Jinkyu Jung, Leo J.Y. Kim, Xiuxing Wang, Qiulian Wu, Tanwarat Sanvoranart, Christopher G. Hubert, Briana C. Prager, Lisa C. Wallace, Xun Jin, Stephen C. Mack, Jeremy N. Rich

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Figure 8

C/EBPβ promotes upregulation of nicotinamide metabolism genes.

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C/EBPβ promotes upregulation of nicotinamide metabolism genes.
(A) Corre...
(A) Correlation between NNMT and transcription factors and transcription coactivators in TCGA GBM RNAseq dataset. Pearson correlation test was used to evaluate relationship. TF, transcription factor; TCoF, transcription cofactor. (B) ChIP-seq analysis of glioblastoma samples and published datasets visualized on IGV 2.3.80: H3K27ac ChIP-seq data from glioblastoma tissues (n = 5), nonmalignant brain tissue (n = 5), proneural (n = 8 ), and mesenchymal GSCs (n = 8) marking enhancer regions (Stephen C. Mack, unpublished observations); C/EBPβ ChIP-seq from ENCODE database (91, 92); NF-κB complex ChIP-seq data from previously published studies (93, 94). (C) Motif analysis of enhancer regions of upregulated genes of the nicotinamide and nicotinate metabolism pathway (NNMT, NAMPT, MAT2A, AHCY, BST1, and BST2). P value represents the motif offset probability that the match occurred by random chance according to the null model. E value represents the expected number of times that the given query sequence would be expected to match a target motif as well or better than the observed match in a randomized target database of the given size. Q value is the match false discovery rate (84–86). (D) Schema for ChIP-PCR primer design in C/EBPβ ChIP peak-enriched regions in NNMT, NAMPT, IL6, and ASCL1 regulatory regions. (E) ChIP-PCR analysis of NNMT, NAMPT, IL6, and ASCL1 loci in mesenchymal T4121 GSCs. (F and G) RT-PCR of CEBPB and NNMT mRNA in T4121 GSCs transduced with shRNAs targeting CEBPB and NNMT and nontargeting controls (shCTRL).

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