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Vaginal microbiome modulates topical antiretroviral drug pharmacokinetics
Ekaterina Taneva, Shada Sinclair, Pedro M.M. Mesquita, Brian Weinrick, Scott A. Cameron, Natalia Cheshenko, Kerry Reagle, Bruce Frank, Sujatha Srinivasan, David Fredricks, Marla J. Keller, Betsy C. Herold
Ekaterina Taneva, Shada Sinclair, Pedro M.M. Mesquita, Brian Weinrick, Scott A. Cameron, Natalia Cheshenko, Kerry Reagle, Bruce Frank, Sujatha Srinivasan, David Fredricks, Marla J. Keller, Betsy C. Herold
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Research Article AIDS/HIV

Vaginal microbiome modulates topical antiretroviral drug pharmacokinetics

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Abstract

Tenofovir gel and dapivirine ring provided variable HIV protection in clinical trials, reflecting poor adherence and possibly biological factors. We hypothesized that vaginal microbiota modulates pharmacokinetics and tested the effects of pH, individual bacteria, and vaginal swabs from women on pharmacokinetics and antiviral activity. Tenofovir, but not dapivirine, uptake by human cells was reduced as pH increased. Lactobacillus crispatus actively transported tenofovir leading to a loss in drug bioavailability and culture supernatants from Gardnerella vaginalis, but not Atopobium vaginae, blocked tenofovir endocytosis. The inhibition of endocytosis mapped to adenine. Adenine increased from 65.5 μM in broth to 246 μM in Gardnerella, but decreased to 9.5 μM in Atopobium supernatants. This translated into a decrease in anti-HIV activity when Gardnerella supernatants or adenine were added to cultures. Dapivirine was also impacted by microbiota, as drug bound irreversibly to bacteria, resulting in decreased antiviral activity. When drugs were incubated with vaginal swabs, 30.7% ± 5.7% of dapivirine and 63.9% ± 8.8% of tenofovir were recovered in supernatants after centrifugation of the bacterial cell pellet. In contrast, no impact of microbiota on the pharmacokinetics of the prodrugs, tenofovir disoproxil fumarate or tenofovir alafenamide, was observed. Together, these results demonstrate that microbiota may impact pharmacokinetics and contribute to inconsistent efficacy.

Authors

Ekaterina Taneva, Shada Sinclair, Pedro M.M. Mesquita, Brian Weinrick, Scott A. Cameron, Natalia Cheshenko, Kerry Reagle, Bruce Frank, Sujatha Srinivasan, David Fredricks, Marla J. Keller, Betsy C. Herold

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Figure 2

TFV and DPV pharmacokinetics are modified by vaginal microbiota.

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TFV and DPV pharmacokinetics are modified by vaginal microbiota.
(A) Vag...
(A) Vaginal bacteria were exposed to 1 μM radiolabeled TFV, TDF, or TAF for 2 hours at 37°C, and radiolabeled drug recovered in the supernatants (extracellular drug) was quantified by liquid scintillation counting after pelleting the bacteria and expressed as percentage of input. (B) Tenofovir (0, 10, 100, or 1,000 μM) was incubated with live or heat-inactivated G. vaginalis (strain 594) or NYC III medium without bacteria (control) for 6 hours at 37°C and the extracellular levels of drug were quantified by HPLC-MS/MS. Results are presented as mean ± SEM of 2 independent experiments per condition. (C) Radiolabeled drug recovered in supernatant was quantified after incubating TFV with different species of live or heat-killed L. crispatus; (D) after incubation with L. crispatus (strain 60) at 4°C or 37°C in the presence of increasing concentrations of unlabeled drug; (E) at different pH; and (F) in the presence of probenecid (0–5 mM). (G) Live or heat-killed bacteria were exposed to 1 μM radiolabeled DPV and extracellular drug recovered quantified by scintillation counting as in panel A. Results represent mean ± SEM of 2 to 4 independent experiments, with each sample tested in duplicate. (H) Fresh vaginal swab eluents (without adjustment of pH) were incubated with 1 μM [3H]TFV (n = 11), [3H]TDF (n = 5), [14C]TAF (n = 11), or [3H]DPV (n = 11) for 2 hours at 37°C and then subjected to centrifugation and filtration. The radioactivity recovered in the supernatants was quantified by scintillation counting and results are expressed as percentage of input radioactivity (mean and interquartile range). The asterisks indicate statistical significance by unpaired Student’s t test comparing extracellular drug recovery relative to abiotic controls (panels A, B, and F) or by 1-way ANOVA with a Bonferroni’s post hoc analysis compared to no unlabeled TFV (C), no probenecid (E), or TAF (G). *P < 0.05; **P < 0.01, ***P < 0.001; ****P < 0.0001.

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