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Epigenetic modulation of β cells by interferon-α via PNPT1/mir-26a/TET2 triggers autoimmune diabetes
Mihaela Stefan-Lifshitz, Esra Karakose, Lingguang Cui, Abora Ettela, Zhengzi Yi, Weijia Zhang, Yaron Tomer
Mihaela Stefan-Lifshitz, Esra Karakose, Lingguang Cui, Abora Ettela, Zhengzi Yi, Weijia Zhang, Yaron Tomer
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Research Article Endocrinology

Epigenetic modulation of β cells by interferon-α via PNPT1/mir-26a/TET2 triggers autoimmune diabetes

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Abstract

Type 1 diabetes (T1D) is caused by autoimmune destruction of pancreatic β cells. Mounting evidence supports a central role for β cell alterations in triggering the activation of self-reactive T cells in T1D. However, the early deleterious events that occur in β cells, underpinning islet autoimmunity, are not known. We hypothesized that epigenetic modifications induced in β cells by inflammatory mediators play a key role in initiating the autoimmune response. We analyzed DNA methylation (DNAm) patterns and gene expression in human islets exposed to IFN-α, a cytokine associated with T1D development. We found that IFN-α triggers DNA demethylation and increases expression of genes controlling inflammatory and immune pathways. We then demonstrated that DNA demethylation was caused by upregulation of the exoribonuclease, PNPase old-35 (PNPT1), which caused degradation of miR-26a. This in turn promoted the upregulation of ten-eleven translocation 2 (TET2) enzyme and increased 5-hydroxymethylcytosine levels in human islets and pancreatic β cells. Moreover, we showed that specific IFN-α expression in the β cells of IFNα–INS1CreERT2 transgenic mice led to development of T1D that was preceded by increased islet DNA hydroxymethylation through a PNPT1/TET2–dependent mechanism. Our results suggest a new mechanism through which IFN-α regulates DNAm in β cells, leading to changes in expression of genes in inflammatory and immune pathways that can initiate islet autoimmunity in T1D.

Authors

Mihaela Stefan-Lifshitz, Esra Karakose, Lingguang Cui, Abora Ettela, Zhengzi Yi, Weijia Zhang, Yaron Tomer

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Figure 1

IFN-α induces DNA demethylation and upregulation of gene expression in human pancreatic islets.

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IFN-α induces DNA demethylation and upregulation of gene expression in h...
(A) Percentage of differentially methylated CpG sites in IFN-α–treated versus untreated pancreatic islets. (B) Percentage of up- and downregulated gene transcripts in IFN-α–treated compared with untreated pancreatic islets. (C) Heatmaps showing changes in mRNA expression and DNA methylation of the hypomethylated and upregulated genes in pancreatic islets. Rows represent genes and columns represent islet samples treated (+) or untreated (–) with IFN-α; red indicates upregulation of gene expression or DNA hypermethylation, while green indicates downregulation of gene expression or DNA hypomethylation; s1, s2, and s3 indicate IFN-α–treated samples and c1, c2, and c3 indicate untreated controls. (D) Top Gene Ontology (GO) terms based on biological processes (BP) overrepresented in the group of genes with increased mRNA expression and DNA hypomethylation.

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