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SPP1hi macrophages, NKG7 T cells, CCL5hi fibroblasts, and IgM plasma cells are dominant features of necrobiosis
Stephanie T. Le, Alina I. Marusina, Alexander A. Merleev, Amanda Kirane, Olga Kruglinskaya, Andrey Kunitsyn, Nikolay Yu Kuzminykh, Xianying Xing, Sophie Y. Li, William Liakos, J. Michelle Kahlenberg, Andrea Gompers, Lauren Downing, Sahiti Marella, Allison C. Billi, Paul W. Harms, Lam C. Tsoi, Marie-Charlotte Brüggen, Iannis E. Adamopoulos, Johann E. Gudjonsson, Emanual Maverakis
Stephanie T. Le, Alina I. Marusina, Alexander A. Merleev, Amanda Kirane, Olga Kruglinskaya, Andrey Kunitsyn, Nikolay Yu Kuzminykh, Xianying Xing, Sophie Y. Li, William Liakos, J. Michelle Kahlenberg, Andrea Gompers, Lauren Downing, Sahiti Marella, Allison C. Billi, Paul W. Harms, Lam C. Tsoi, Marie-Charlotte Brüggen, Iannis E. Adamopoulos, Johann E. Gudjonsson, Emanual Maverakis
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Research Article Dermatology Immunology

SPP1hi macrophages, NKG7 T cells, CCL5hi fibroblasts, and IgM plasma cells are dominant features of necrobiosis

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Abstract

Necrobiosis is a histologic term used to describe abnormal deposits of “degenerating” collagen within the skin. It can be found as an incidental finding in various granulomatous conditions, but is a hallmark of necrobiosis lipoidica (NL) and necrobiotic xanthogranuloma (NXG). There is limited prior research on necrobiosis. Here, we employed single-cell analysis of lesional and nonlesional skin to study the pathophysiology of necrobiosis. Our findings demonstrate that necrobiotic lesional skin is characterized by SPP1hi macrophages expressing MARCO; NKG7-expressing effector CD8+ T cells coexpressing CCL5, IFNG, GZMs, and PRF1; CCL5hi fibroblasts coexpressing CXCL9, diverse collagens (e.g., COL4A4, COL11A1, COL8A1), and TIMP1; and IGHM-expressing plasma cells. Integrative analysis of signaling ligands and receptor expression identified strong cell-cell communication between NKG7+ T cells, CCL5hi fibroblasts, and SPP1-expressing macrophages. In contrast, these cell populations were not dominant features of systemic sclerosis, another collagen deposition disease. Furthermore, although SPP1-expressing macrophages were detectable in sarcoidosis, IFNG-expressing T cells were a more defining feature of sarcoidosis compared with NL and NXG. From these findings, we speculate that necrobiosis results from the deposition of diverse collagens and ECM proteins through a process driven by CCL5-expressing fibroblasts and SPP1-expressing macrophages.

Authors

Stephanie T. Le, Alina I. Marusina, Alexander A. Merleev, Amanda Kirane, Olga Kruglinskaya, Andrey Kunitsyn, Nikolay Yu Kuzminykh, Xianying Xing, Sophie Y. Li, William Liakos, J. Michelle Kahlenberg, Andrea Gompers, Lauren Downing, Sahiti Marella, Allison C. Billi, Paul W. Harms, Lam C. Tsoi, Marie-Charlotte Brüggen, Iannis E. Adamopoulos, Johann E. Gudjonsson, Emanual Maverakis

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Figure 4

Single-cell analysis identifies a population of CCL5hi fibroblasts in NL lesional skin.

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Single-cell analysis identifies a population of CCL5hi fibroblasts in NL...
(A) Uniform manifold approximation and projection (UMAP) of NL lesional, nonlesional, and healthy control scRNA-seq data presents results as a 2-dimensional image. Each dot represents a single cell, and each cluster represents a group of cells with similar transcriptomes. A cluster with increased expression of mesenchymal genes was identified (red cluster labeled “Fibroblasts,” n = 5,041). Eight fibroblast subclusters were identified. (B) Distribution of CCL5 and CXCL9 expression across the 8 fibroblast clusters. The color range goes from yellow to dark blue, with dark blue indicating the highest expression. CCL5 and CXCL9 are predominantly expressed in Cluster 8 (red arrows), with less expression detected in Cluster 6. No or very little expression was detected in other clusters. (C) Violin plots of differentially expressed genes of interest across the 8 fibroblast clusters. (D) Heatmap of genes highly expressed in each of the 8 fibroblast subclusters. (E) Volcano plot comparing gene expression in NL lesional skin fibroblasts to control fibroblasts, identifying COL4A4, CCL5, CXCL9, CD74, and HLA-DRA as the most significant differentially expressed genes. Other differentially expressed genes of interest include FN1, ACTA2, COL8A1, MMP9, and TIMP1.

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