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Tape strip expression profiling of juvenile dermatomyositis skin reveals mitochondrial dysfunction contributing to disease endotype
Jessica L. Turnier, Sarah M.H. Vandenbergen, Madison E. McClune, Christine Goudsmit, Sophia Matossian, Meredith Riebschleger, Nadine Saad, Jacqueline A. Madison, Smriti Mohan, Johann E. Gudjonsson, Lam C. Tsoi, Celine C. Berthier, J. Michelle Kahlenberg
Jessica L. Turnier, Sarah M.H. Vandenbergen, Madison E. McClune, Christine Goudsmit, Sophia Matossian, Meredith Riebschleger, Nadine Saad, Jacqueline A. Madison, Smriti Mohan, Johann E. Gudjonsson, Lam C. Tsoi, Celine C. Berthier, J. Michelle Kahlenberg
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Research Article Dermatology Inflammation

Tape strip expression profiling of juvenile dermatomyositis skin reveals mitochondrial dysfunction contributing to disease endotype

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Abstract

Skin inflammation in juvenile dermatomyositis (JDM) can signal disease onset or flare, and the persistence of cutaneous disease can prevent complete disease remission. The noninvasive study of cutaneous expression signatures through tape stripping (TS) holds the potential to reveal mechanisms underlying disease heterogeneity and organ-specific inflammation. The objectives of this study were to (a) define TS expression signatures in lesional and nonlesional JDM skin, (b) analyze TS signatures to identify JDM disease endotypes, and (c) compare TS and blood signatures. Although JDM lesional skin demonstrated interferon signaling as the top upregulated pathway, nonlesional skin uniquely highlighted pathways involved in metabolism, angiogenesis, and calcium signaling. Both lesional and nonlesional skin shared inflammasome pathway dysregulation. Using unsupervised clustering of skin expression data, we identified a treatment-refractory JDM subgroup distinguished by upregulation of genes associated with mitochondrial dysfunction. The treatment-refractory JDM subgroup also demonstrated higher interferon, angiogenesis, and innate immune expression scores in skin and blood, though scores were more pronounced in skin as compared with blood. TS expression signatures in JDM provided insight into disease mechanisms and molecular subgroups. Skin, as compared with blood, transcriptional profiles served as more sensitive markers to classify disease subgroups and identify candidate treatment targets.

Authors

Jessica L. Turnier, Sarah M.H. Vandenbergen, Madison E. McClune, Christine Goudsmit, Sophia Matossian, Meredith Riebschleger, Nadine Saad, Jacqueline A. Madison, Smriti Mohan, Johann E. Gudjonsson, Lam C. Tsoi, Celine C. Berthier, J. Michelle Kahlenberg

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Figure 6

Immune cell enrichment analysis in JDM and control skin using CIBERSORTx.

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Immune cell enrichment analysis in JDM and control skin using CIBERSORTx...
(A) Heatmap from each relevant immune cell type relative fraction in CTL (n = 21), NL (n = 55) JDM, and L (n = 22) JDM skin. (B) Graphs illustrating the relative fraction of B cells, plasma cells, macrophages, dendritic cells, and neutrophils as computed by CIBERSORTx in CTL and JDM samples (each dot represents 1 sample). (C) Heatmap from each relevant immune cell type relative fraction in each sample from control skin and samples in each identified skin subgroup. (D) Graphs illustrating the relative fraction of B cells and macrophages as computed by CIBERSORTx in each CTL and JDM subgroup sample (each dot represents 1 sample). CTL: n = 21, JDM_NL: n = 55, JDM_L: n = 22, JDM subgroup 1: n = 65, JDM subgroup 2: n = 12. Unpaired 2-tailed parametric Student’s t test with Benjamini-Hochberg correction was used for the comparison between 2 groups.

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ISSN 2379-3708

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