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Splicing variants in MYRF cause partial loss of function in the retinal pigment epithelium leading to nanophthalmos
Gabrielle M. Rozumek, Michelle L. Brinkmeier, Bin Guan, Su Qing Wang, Catherine Tower, Nina T. Yang, Rachel S. Lim, Dejuan Kong, Daniel Soden, Qitao Zhang, John Y.S. Han, Jason M.L. Miller, Lijin Dong, D. Ford Hannum, Sayoko E. Moroi, Julia E. Richards, Robert B. Hufnagel, Lev Prasov
Gabrielle M. Rozumek, Michelle L. Brinkmeier, Bin Guan, Su Qing Wang, Catherine Tower, Nina T. Yang, Rachel S. Lim, Dejuan Kong, Daniel Soden, Qitao Zhang, John Y.S. Han, Jason M.L. Miller, Lijin Dong, D. Ford Hannum, Sayoko E. Moroi, Julia E. Richards, Robert B. Hufnagel, Lev Prasov
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Research Article Genetics Ophthalmology

Splicing variants in MYRF cause partial loss of function in the retinal pigment epithelium leading to nanophthalmos

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Abstract

Improper light focus on the retina, refractive error, is primarily caused by eye size differences and is the leading cause of vision loss worldwide. C-terminal variants in the Myelin regulatory factor (MYRF) gene, a retinal pigment epithelium–derived (RPE-derived) transcription factor, lead to isolated nanophthalmos characterized by a small, though structurally sound eye. However, other MYRF loss-of-function variants cause syndromic disease. To address this discrepancy, in vitro and animal studies were performed on a pathogenic C-terminal variant dG-MYRF (p.Gly1126fs30*, c.3376-1G>A). Human RPE cells or primary RPE transduced with dG-MYRF showed reduced target gene expression, with decreased steady-state levels of the C-terminal cleavage product, but normal cleavage and localization. A homozygous humanized MYRF C-terminal mouse model (MyrfhumdG/humdG) was embryonic lethal by E18.5, while WT (MyrfhumWT/humWT) mice were viable. Single-cell RNA-seq from E17.5 MyrfhumdG/humdG and KO RxCre;Myrffl/fl (E15.5 and P0) mice revealed shared differentially expressed genes, with decreased effect size in the MyrfhumdG/humdG eyes. These findings support dG-MYRF as a hypomorphic allele. Additionally, 2 MYRF splicing variants creating nonfunctional isoforms were found in families with isolated nanophthalmos. Overall, hypomorphic MYRF alleles underlie isolated nanophthalmos, supporting a tissue-specific threshold effect and highlighting unique roles for the MYRF C-terminus in the RPE.

Authors

Gabrielle M. Rozumek, Michelle L. Brinkmeier, Bin Guan, Su Qing Wang, Catherine Tower, Nina T. Yang, Rachel S. Lim, Dejuan Kong, Daniel Soden, Qitao Zhang, John Y.S. Han, Jason M.L. Miller, Lijin Dong, D. Ford Hannum, Sayoko E. Moroi, Julia E. Richards, Robert B. Hufnagel, Lev Prasov

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Figure 1

Processing of C-terminal MYRF variant in vitro.

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Processing of C-terminal MYRF variant in vitro.
(A) Diagram of amino aci...
(A) Diagram of amino acid changes in WT-MYRF, dG-MYRF, and cleavage deficient variant V679A-MYRF. ProRich, proline rich; DBD, DNA binding domain; ICA, intramolecular chaperone auto-processing; TM, transmembrane; C2, C-terminal. (B) Localization of FLAG-tagged MYRF constructs in ARPE-19 cells show normal nuclear localization of dG-MYRF (n = 3). Scale bar: 50 μm. (C) Western blot of transfected ARPE-19 cells shows no change in cleavage of N-terminal fragment (n = 3). (D) qPCR analysis of RNA from ARPE-19 cells transduced with dG-MYRF, compared with WT-MYRF show decreased levels of transcripts for total Myrf and endogenous Tmem98 mRNA (n = 3) by Student’s t test. *P < 0.05, **P < 0.01.

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