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Interspecies NASH disease activity whole-genome profiling identifies a fibrogenic role of PPARα-regulated dermatopontin
Philippe Lefebvre, Fanny Lalloyer, Eric Baugé, Michal Pawlak, Céline Gheeraert, Hélène Dehondt, Jonathan Vanhoutte, Eloise Woitrain, Nathalie Hennuyer, Claire Mazuy, Marie Bobowski-Gérard, Francesco Paolo Zummo, Bruno Derudas, Ann Driessen, Guy Hubens, Luisa Vonghia, Wilhelmus J. Kwanten, Peter Michielsen, Thomas Vanwolleghem, Jérôme Eeckhoute, An Verrijken, Luc Van Gaal, Sven Francque, Bart Staels
Philippe Lefebvre, Fanny Lalloyer, Eric Baugé, Michal Pawlak, Céline Gheeraert, Hélène Dehondt, Jonathan Vanhoutte, Eloise Woitrain, Nathalie Hennuyer, Claire Mazuy, Marie Bobowski-Gérard, Francesco Paolo Zummo, Bruno Derudas, Ann Driessen, Guy Hubens, Luisa Vonghia, Wilhelmus J. Kwanten, Peter Michielsen, Thomas Vanwolleghem, Jérôme Eeckhoute, An Verrijken, Luc Van Gaal, Sven Francque, Bart Staels
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Research Article Gastroenterology

Interspecies NASH disease activity whole-genome profiling identifies a fibrogenic role of PPARα-regulated dermatopontin

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Abstract

Nonalcoholic fatty liver disease prevalence is soaring with the obesity pandemic, but the pathogenic mechanisms leading to the progression toward active nonalcoholic steatohepatitis (NASH) and fibrosis, major causes of liver-related death, are poorly defined. To identify key components during the progression toward NASH and fibrosis, we investigated the liver transcriptome in a human cohort of NASH patients. The transition from histologically proven fatty liver to NASH and fibrosis was characterized by gene expression patterns that successively reflected altered functions in metabolism, inflammation, and epithelial-mesenchymal transition. A meta-analysis combining our and public human transcriptomic datasets with murine models of NASH and fibrosis defined a molecular signature characterizing NASH and fibrosis and evidencing abnormal inflammation and extracellular matrix (ECM) homeostasis. Dermatopontin expression was found increased in fibrosis, and reversal of fibrosis after gastric bypass correlated with decreased dermatopontin expression. Functional studies in mice identified an active role for dermatopontin in collagen deposition and fibrosis. PPARα activation lowered dermatopontin expression through a transrepressive mechanism affecting the Klf6/TGFβ1 pathway. Liver fibrotic histological damages are thus characterized by the deregulated expression of a restricted set of inflammation- and ECM-related genes. Among them, dermatopontin may be a valuable target to reverse the hepatic fibrotic process.

Authors

Philippe Lefebvre, Fanny Lalloyer, Eric Baugé, Michal Pawlak, Céline Gheeraert, Hélène Dehondt, Jonathan Vanhoutte, Eloise Woitrain, Nathalie Hennuyer, Claire Mazuy, Marie Bobowski-Gérard, Francesco Paolo Zummo, Bruno Derudas, Ann Driessen, Guy Hubens, Luisa Vonghia, Wilhelmus J. Kwanten, Peter Michielsen, Thomas Vanwolleghem, Jérôme Eeckhoute, An Verrijken, Luc Van Gaal, Sven Francque, Bart Staels

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Figure 2

Identifying dermatopontin as a potential contributor to liver fibrosis.

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Identifying dermatopontin as a potential contributor to liver fibrosis.
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(A) Up- and downregulated genes in mouse models of nonalcoholic steatohepatitis (NASH) or fibrosis and in human cohorts of NASH + fibrosis patients. Gene symbols are indicated in each column. Cell type–specific expression is indicated when known (HSC, hepatic stellate cell; KC, Kuppfer cell; HC: hepatocyte; LSEC, liver sinusoidal endothelial cell; CHC, intrahepatic cholangiocyte; NPC, nonparenchymal cell). A complete list of genes can be found in Supplemental Table 10. Genes whose expression is normalized by gastric bypass (GABY) are highlighted in yellow. (B) Top-ranking terms characterizing upregulated genes in advanced NASH. The upregulated gene list was searched against the Hallmark gene sets, gene ontology (GO) biological processes, GO cellular components, and GO molecular functions annotation table, as well as the KEGG pathway database using Metascape. (C) Potential regulatory pathways. The upregulated gene list was scanned for the occurrence of actual transcription factor binding site as determined by ChIP-Seq assays from the ENCODE and ChEA databases using the EnrichR web server (http://amp.pharm.mssm.edu/Enrichr/) (82, 83). Positive hits are indicated in red. (D) Tissue-specific expression of Dpt in mouse tissues. RNAs were extracted from indicated tissues and analyzed by qPCR. Results are expressed relative to a control value arbitrarily set to 1 (liver) and are the mean ± SEM (n = 6). Data were compared using a 2-tailed ANOVA corrected for multiple comparisons using the Dunnett’s post hoc test. ***P < 0.005. (E) Relative expression of Dpt in mouse purified hepatocytes and hepatic stellate cells. (F) Relative expression of DPT in TGFβ-stimulated (10 ng/ml, 24 hours) LX2 cells.

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