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Early molecular correlates of adverse events following yellow fever vaccination
Candice Y.Y. Chan, Kuan Rong Chan, Camillus J.H. Chua, Sharifah nur Hazirah, Sujoy Ghosh, Eng Eong Ooi, Jenny G. Low
Candice Y.Y. Chan, Kuan Rong Chan, Camillus J.H. Chua, Sharifah nur Hazirah, Sujoy Ghosh, Eng Eong Ooi, Jenny G. Low
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Research Article Infectious disease Vaccines

Early molecular correlates of adverse events following yellow fever vaccination

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Abstract

The innate immune response shapes the development of adaptive immunity following infections and vaccination. However, it can also induce symptoms such as fever and myalgia, leading to the possibility that the molecular basis of immunogenicity and reactogenicity of vaccination are inseparably linked. To test this possibility, we used the yellow fever live-attenuated vaccine (YFLAV) as a model to study the molecular correlates of reactogenicity or adverse events (AEs). We analyzed the outcome of 68 adults who completed a YFLAV clinical trial, of which 43 (63.2%) reported systemic AEs. Through whole-genome profiling of blood collected before and after YFLAV dosing, we observed that activation of innate immune genes at day 1, but not day 3 after vaccination, was directly correlated with AEs. These findings contrast with the gene expression profile at day 3 that we and others have previously shown to be correlated with immunogenicity. We conclude that although the innate immune response is a double-edged sword, its expression that induces AEs is temporally distinct from that which engenders robust immunity. The use of genomic profiling thus provides molecular insights into the biology of AEs that potentially forms a basis for the development of safer vaccines.

Authors

Candice Y.Y. Chan, Kuan Rong Chan, Camillus J.H. Chua, Sharifah nur Hazirah, Sujoy Ghosh, Eng Eong Ooi, Jenny G. Low

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Figure 3

Whole-genome expression reveals significant differences in innate immune signaling pathways in those with delayed AEs.

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Whole-genome expression reveals significant differences in innate immune...
(A) Top 10 enriched gene sets identified by gene set enrichment analysis (GSEA) from venous blood microarray data in subjects with delayed adverse events (AEs) (n = 18) compared with subjects without AEs (n = 8) at day 1 after yellow fever (YF) vaccination, ranked by normalized enrichment scores (NES), with FDR q values less than 0.25. (B) Heatmap of the microarray data showing fold changes observed at day 1 versus day 0, for genes in the Toll-like receptor cascades, IFN, and interleukins (ILS) signaling. (C) Pearson’s correlation (r) of log-transformed fold change (day 1 versus day 0) of genes CSF2RB, IFITM3, MX2, IFIT3, IFIT1, and HCK, measured using nCounter assay. All 9 subjects shown here were independent of the data set from the microarray analysis. P values indicate significance of the slope. (D) Top 10 enriched gene sets from venous blood microarray data ranked by NES at day 3 after vaccination. Dotted line represents the cut-off FDR q value of 0.25.

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